Credentials

Ph.D in Plant Molecular Biology from CPMB, Hyderabad

• Indian Institute Of Chemical Biology, Kolkata, India - Senior Principal Scientist, Professor, AcSIR  (Oct 2018 - till date)
• Indian Institute Of Chemical Biology, Kolkata, India - Principal Scientist and Ramalingaswamy fellow, Associate Professor, AcSIR (2002 Sept - 2012 July)
• Virginia Bioinformatics Institute, Virginia Tech, USA - Senior Research Scienist (2002 Sept - 2012 July)
• Avesthagengraine Pvt. limited, Bangalore, India - Head Bioinformatics division (2001 Nov - 2002 July)
• DSQ Biotech limited, Chennai, India - Scientist (2000 Aug - 2001 Oct)  

Honours & Awards

• Elected Fellow of West Bengal Academy of Science and technology (WAST) , WAST (2024)
• Associate Editor in Frontiers in Microbiology, Frontiers Editorial Board (2022)
• Senior Editor of MPMI (Molecular Plant Microbial Interaction) - An APS journal , American Phytopathological Society (2020-2023)
• Guest Associate Editor in Frontiers in Genetics for " Evolutionary and Genomic Microbiology", Frontiers in Genetics and Frontiers in Microbiology (2020, 2021, 2022)
• Research Advisory committee member at NTRF, National Tea Research Foundation (2019-2022, 2022-2024)
• Invited Chair of OMGN, Nanjing University, China, Oomycetes Molecular Genetics Network (2018)
• Invited Chair of OMGN, SLU, Sweden, Oomycetes Molecular Genetics Network (2016)
• Full Travel award to attend open school grid computing workshop, NSF (2015)
• Invited Chair of OMGN, Asilomar, USA, Oomycetes Molecular Genetics Network (2013)
• Ramalingaswamy re-entry Fellowship, DBT, Govt. of India (2012-2017)
• Invited Chair OMGN, with full travel support, Nanjing, China, Oomycetes Molecular Genetics Network (2012)
• OMGN Travel Award, Asilomar, CA, USA, Oomycetes Molecular Genetics Network (2011)
• Annotation Jamboree of Pythium ultimum, MSU, Michigan, USA, Michigan State University, USA (2009)
• OMGN Travel award to Scotland, Oomycetes Molecular Genetics Network (2008)
• Travel award to attend optimal control theory, University of Tenesse, USA (2003, Septmeber)
• Travel award to attend optimal control theory, University of Tenesse, USA (2003, July)
• CSIR (SRF), CSIR (1995)
• CSIR (JRF-NET), CSIR(1993) 

Grants & Supports

• A comprehensive approach to addressing Anti Microbial Resistance (CSIR - MMP075202, 500 Lakhs, 2024-2027)
• National Networking Project at CSIR - Indian Institute of Chemical Biology ( DBT, 2023-2028 , PI, Ongoing , Value: 170 Lakhs )
• Development  of Clinical data repository and analysis platform for disease detection and prognosis ( DBT, 2023-2038 , PI, Ongoing, Value:  17 Lakhs)
• Mycoremediation of Toxic Heterocyclic Organosulfur Compounds: Multi ‘Omics’ Approach to Unravel the Novel Biodesulfurization Pathway(s) in the Filamentous Fungus Arthrinium malaysianum Grown in Presence of 2-Deoxy Glucose (2DG): Fabrication of Novel Biosorbent for Translational Research ( DST/TARE, 2022-2025, PI, Ongoing, Value: 18 Lakhs )
• Platform integration for high Through-put multi omics data analysis and text processing at CSIR - Indian Institute of Chemical Biology, Kolkata ( DBT, 2022-2027 , PI, Ongoing , Value: 227 Lakhs )
• Leishmaniasis: Target specific approaches to affect host pathogen interaction and disease process ( CSIR, 2020-2025 , Co-PI, Ongoing , Value: 300 Lakhs )
• Classification and characterization of Phytophthora capsici effectors in understanding the early, late onset of pathogenesis and developing inhibition strategies ( CSIR, 2020-2023 , PI, Completed , Value: 197 Lakhs )
• Development of thermally stable and antimicrobial bioactive glass based bone graft material ( CSIR, 2020-2023 , Co-PI, Completed , Value: 50 Lakhs )
• Development of portable system with data analysis and relational data warehouse packages for high throughput structural and functional genomics data ( DBT, 2017-2020 , PI, Completed , Value: 83.72 Lakhs )
• Identification of stress responsive microRNA in Arabidopsis under altered GSH condition ( DST , 2017-2020 ,  Acting PI, Completed , Value: 30 Lakhs )
• Assessing the genome sequences of Termitomyces clypeatus for novel metabolite discovery through whole genome sequencing methods and characterization of the metabolites for application in biotechnology ( DBT , 2016-2019 ,  PI, Completed , Value: 56 Lakhs )
• Whole Genome and Transcriptome sequencing of selected cyanobacterial genomes for identification of the role their genes in metabolic pathways related to bio-energy production ( ICAR , 2014-2017,  PI, Completed , Value: 32 Lakhs )
• Development of comprehensive bioinformatics resource for newly sequenced genomes ( DBT - Ramalingaswamy , 2012-2017 ,  PI, Completed , Value: 32 Lakhs )
• Genesis: Cyanobacterial Genome Harvesting ( CSIR  , 2012-2014 , Co- PI, Completed , Value: 7 Lakhs )

Patents & Publications

Publications from CSIR-IICB:

2025:

Kant, Shashi, Sreyashi Das, Subhajeet Dutta, Kajal Mandal, Aditya Upadhyay, Aditya N. Sarangi, Rajib Majumder, and Sucheta Tripathy*. ‘Comparative Genomics of Endophytic Fungi Apiospora Malaysiana with Related Ascomycetes Indicates Adaptation Attuned to Lifestyle Choices with Potential Sustainable Cellulolytic Activity’. DNA Research, 2025, 10.1093/dnares/dsaf011. IF: 3.9

Dutta, Subhajeet, Kajal Mandal, Aditya Upadhyay, Soumen Das, Tanmoy Dey, Sanjoy Guha Roy and Sucheta Tripathy*. ‘Comparative genome analysis of Phytophthora melonis MCC 9865 WB isolated from 2 Eastern India with other isolates reveal host mediated adaptation’. The Nucleus. 2025 . IF: 2.9

Anustup Chakraborty, Sakthi Prasad, Indrajit Tah, Anuradha Jana, Shashi Kant, Sucheta  Tripathy, Prashanta Kumar Sinha, Anal Tarafder and Kaushik Biswas. Tailoring borosilicate bioactive glasses with fluorine: A structural and functional perspective for bone implant applications. Ceramics International (2025). 10.1016/j.ceramint.2025.07.017. IF: 5.16

Brasier, Clive M., Niklaus J. Grünwald, Tyler B. Bourret, Francine Govers, Bruno Scanu, David E. L. Cooke, Tanay Bose, David L. Hawksworth, Z. Gloria Abad, and M. Victoria Albarracin…Sucheta Tripathy. ‘Preserving the Biologically Coherent Generic Concept of Phytophthora,“Plant Destroyer”’. Phytopathology, 10.1094/PHYTO-11-24-0372-LE (2025). IF: 2.6

Das S, Tripathy S* (2025). OMICsPCA: An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples. oi:10.18129/B9.bioc.OMICsPCA, R package version 1.26.0, https://bioconductor.org/packages/OMICsPCA

2024:

Das, Bornita, Asharani Prusty, Subhajeet Dutta, Aditi Maulik, Yogita Dahat, Deepak Kumar, and Sucheta Tripathy*. ‘Exploring the Uncharted Seas: Metabolite Profiling Unleashes the Anticancer Properties of Oscillatoria Salina’. Heliyon 10, no. 16 (2024). IF: 4.1

Chakraborty, Anustup, Subhadip Bodhak, Indrajit Tah, Shashi Kant, Debolina Saha, Krishna K. Dey, Neelima Gupta, Manasi Ghosh, Sucheta Tripathy, and Amarnath R. Allu. ‘Tailored Bioactive Glass Coating: Navigating Devitrification Toward a Superior Implant Performance’. ACS Biomaterials Science & Engineering 10, no. 8 (2024): 5300–5312. IF: 5.4

Kant, Shashi, Sreyashi Das, Saheli Roy, and Sucheta Tripathy*. ‘Fungal Cellulases: A Comprehensive Review’. The Nucleus, 2024, 1–17. IF: 2.7

Geeta, Aribam, Mayuri Mukherjee, Bornita Das, Subhajeet Dutta, Asharani Prusty, Samrat Ghosh, Anashuya Biswas Raha, Mousumi Poddar Sarkar, and Sucheta Tripathy*. ‘Distinct Genome Trichotomy in Members of Hapalosiphonaceae Is Guided by Habitat Adaptation with Mastigocladus Laminosus UU774 as a Case Study’. Algal Research 82 (2024): 103603. IF: 4.6

Dutta, Subhajeet, Shreya Kothari, Deeksha Singh, Samrat Ghosh, Aditya Narayan Sarangi, Smruti Sanjita Behera, Satish Prajapati, Prasanta Kumar Sinha, Asharani Prusty, and Sucheta Tripathy*. ‘Novel Oceanic Cyanobacterium Isolated from Bangaram Island with Profound Acid Neutralizing Ability Is Proposed as Leptolyngbya Iicbica Sp. Nov. Strain LK’. Molecular Phylogenetics and Evolution 197 (2024): 108092. IF: 3.6

2023:

Kronmiller, Brent A., Nicolas Feau, Danyu Shen, Javier F. Tabima, Shahin S. Ali, Andrew D. Armitage, Felipe Arredondo, Bryan A. Bailey, Stephanie R. Bollmann, Angela Dale…Sucheta Tripathy.. ‘Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer’. Molecular Plant-Microbe Interactions 36, no. 1 (2023): 26–46. IF: 4.171

Chakraborty, Anustup, Sakthi Prasad, Shashi Kant, Rathina Vel, Sucheta Tripathy, P. K. Sinha, Krishna K. Dey, Lekhan Lodhi, Manasi Ghosh, and Amarnath R. Allu. ‘Thermally Stable Bioactive Borosilicate Glasses: Composition–Structure–Property Correlations’. Journal of Materials Research 38, no. 11 (2023): 2969–85. IF: 2.7

2022:

Mukherjee, Sumit, Zhuoran Kuang, Samrat Ghosh, Rajesh Detroja, Gon Carmi, Sucheta Tripathy, Danny Barash, Milana Frenkel-Morgenstern, Eviatar Nevo, and Kexin Li. ‘Incipient Sympatric Speciation and Evolution of Soil Bacteria Revealed by Metagenomic  and Structured Non-Coding RNA Analysis’. Biology 11(8), 1110. (2022). IF: 5.168

Mukherjee, Mayuri, Aribam Geeta, Samrat Ghosh, Asharani Prusty, Subhajeet Dutta, Aditya Narayan Sarangi, Smrutisanjita Behera, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Genome Analysis Coupled with Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus Laminosus UU774 under Exogenous Nitrogen Supplement’. Frontiers in Microbiology 13 (2022): 909289. IF: 6.064

Mandal, Kajal, Subhajeet Dutta, Aditya Upadhyay, Arijit Panda, and Sucheta Tripathy*. ‘Comparative Genome Analysis across 128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution and Localized Evolution of Compartmentalized Genomes’. Frontiers in Microbiology 13 (2022): 806398. IF: 6.064

Prasad, Sakthi, Margit Fabian, Anal Tarafder, Shashi Kant, Prasanta Kumar Sinha, Sucheta Tripathy, Annapurna Kalyandurg, Amarnath Reddy Allu, and Kaushik Biswas. ‘Factors Governing the Sinterability, In Vitro Dissolution, Apatite Formation and Antibacterial Properties in B2O3 Incorporated S53P4 Based Glass Powders’. Ceramics International 48, no. 4 (2022): 4512–25. IF: 5.16

2021:

Ye, Wenwu*, Qinhu Wang*, Sucheta Tripathy*, Meixiang Zhang*, and Ramesh R. Vetukuri*. ‘Genomics and Effectomics of Filamentous Plant Pathogens’. Frontiers in Genetics. Frontiers Media SA, 2021. IF: 4.6

Ghosh, Samrat, Aditya Narayan Sarangi, Mayuri Mukherjee, Deeksha Singh, Madduluri Madhavi, and Sucheta Tripathy*. ‘Reconstructing Draft Genomes Using Genome Resolved Metagenomics Reveal Arsenic Metabolizing Genes and Secondary Metabolites in Fresh Water Lake in Eastern India’. Bioinformatics and Biology Insights 15 (2021): 11779322211025332. IF: 2.3

2020:

Yuzon, Jennifer David, Renaud Travadon, Mathu Malar C, Sucheta Tripathy, Nathan Rank, Heather K. Mehl, David M. Rizzo, Richard Cobb, Corinn Small, and Tiffany Tang. ‘Asexual Evolution and Forest Conditions Drive Genetic Parallelism in Phytophthora Ramorum’. Microorganisms 8, no. 6 (2020): 940. IF: 4.128

Dasgupta, Pratiti, Abhishek Das, Sambit Datta, Ishani Banerjee, Sucheta Tripathy, and Shubho Chaudhuri. ‘Understanding the Early Cold Response Mechanism in IR64 Indica Rice Variety through Comparative Transcriptome Analysis’. BMC Genomics 21 (2020): 1–18. IF: 3.969

Prasad, Sakthi, Sudheer Ganisetti, Anuradha Jana, Shashi Kant, Prasanta Kumar Sinha, Sucheta Tripathy, Kavya Illath, T. G. Ajithkumar, K. Annapurna, and Amarnath R. Allu. ‘Elucidating the Effect of CaF2 on Structure, Biocompatibility and Antibacterial Properties of S53P4 Glass’. Journal of Alloys and Compounds 831 (2020): 154704. IF: 5.316

Das, Pijush, Anirban Roychowdhury, Subhadeep Das, Susanta Roychoudhury, and Sucheta Tripathy*. ‘sigFeature: Novel Significant Feature Selection Method for Classification of Gene Expression Data Using Support Vector Machine and t Statistic’. Frontiers in Genetics 11 (2020): 247. IF: 4.6

Paul, Karnelia, Chinmay Saha, Mayurakshi Nag, Drishti Mandal, Haraprasad Naiya, Diya Sen, Souvik Mitra, Mohit Kumar, Dipayan Bose, Gairik Mukherjee..Sucheta Tripathy.. ‘A Tripartite Interaction among the Basidiomycete Rhodotorula Mucilaginosa, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition’. The Plant Cell 32, no. 2 (2020): 486–507. IF: 11.4

Panda, Arijit, Narendrakumar M. Chaudhari, and Sucheta Tripathy*. ‘Genome Annotator Light (GAL): A Docker-Based Package for Genome Analysis and Visualization’. Genomics 112, no. 1 (2020): 127–34. IF: 6.2

2019:

Ghosh, Samrat, Aditya Narayan Sarangi, Mayuri Mukherjee, Swati Bhowmick, and Sucheta Tripathy*. ‘Reanalysis of Lactobacillus Paracasei Lbs2 Strain and Large-Scale Comparative Genomics Places Many Strains into Their Correct Taxonomic Position’. Microorganisms 7, no. 11 (2019): 487. IF: 4.926

Paul, Karnelia, Chinmay Saha, Mayurakshi Nag, Drishti Mandal, Haraprasad Naiya, Diya Sen, Souvik Mitra, Mohit Kumar, Dipayan Bose, Gairik Mukherjee..Sucheta Tripathy.. ‘A Tripartite Interaction among the Basidiomycete Rhodotorula Mucilaginosa, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition’. The Plant Cell 32, no. 2 (2020): 486–507. IF: 11.4

Prasad, Sakthi, Anuraag Gaddam, Anuradha Jana, Shashi Kant, Prasanta Kumar Sinha, Sucheta Tripathy, Kalyandurg Annapurna, Jose M. F. Ferreira, Amarnath R. Allu, and Kaushik Biswas. ‘Structure and Stability of High CaO-and P2O5-Containing Silicate and Borosilicate Bioactive Glasses’. The Journal of Physical Chemistry B 123, no. 35 (2019): 7558–69.IF: 2.991

Sen, Diya, Karnelia Paul, Chinmay Saha, Gairik Mukherjee, Mayurakshi Nag, Samrat Ghosh, Abhishek Das, Anindita Seal, and Sucheta Tripathy*. ‘A Unique Life-Strategy of an Endophytic Yeast Rhodotorula Mucilaginosa JGTA-S1—a Comparative Genomics Viewpoint’. DNA Research 26, no. 2 (2019): 131–46. IF: 4.458

Malar C, Mathu, Jennifer D. Yuzon, Subhadeep Das, Abhishek Das, Arijit Panda, Samrat Ghosh, Brett M. Tyler, Takao Kasuga, and Sucheta Tripathy*. ‘Haplotype-Phased Genome Assembly of Virulent Phytophthora Ramorum Isolate ND886 Facilitated by Long-Read Sequencing Reveals Effector Polymorphisms and Copy Number Variation’. Molecular Plant-Microbe Interactions 32, no. 8 (2019): 1047–60. IF: 4.1

Panda, Arijit, Narendrakumar M. Chaudhari, Mayuri Mukherjee, Samrat Ghosh, Aditya Narayan Sarangi, C. Mathu Malar, Shashi Kant, Diya Sen, Abhishek Das,  Subhadeep Das and Sucheta Tripathy* ‘Genome/Transcriptome Collection of Plethora of Economically Important, Previously Unexplored Organisms from India and Abroad’. Data in Brief 25 (2019): 104099. IF: 1.046

Malar C, Mathu, Jennifer David Yuzon, Arijit Panda, Takao Kasuga, and Sucheta Tripathy*. ‘Updated Assembly of Phytophthora ramorum Pr102 Isolate Incorporating Long Reads from PacBio Sequencing’. Molecular Plant-Microbe Interactions 32, no. 11 (2019): 1472–74. IF: 4.141

Banerjee, Nilanjana, Subhadeep Das, Sucheta Tripathy, Apurba K. Bandyopadhyay, Nilendu Sarma, Arun Bandyopadhyay, and Ashok K. Giri. ‘MicroRNAs Play an Important Role in Contributing to Arsenic Susceptibility in the Chronically Exposed Individuals of West Bengal, India’. Environmental Science and Pollution Research 26 (2019): 28052–61. IF: 5.19

2018:

Panda, Arijit, Diya Sen, Arup Ghosh, Akash Gupta, Gyan Prakash Mishra, Deeksha Singh, Wenwu Ye, Brett M. Tyler, and Sucheta Tripathy*. ‘EumicrobeDBLite: A Lightweight Genomic Resource and Analytic Platform for Draft Oomycete Genomes’. Molecular Plant Pathology 19, no. 1 (2018): 227–37. IF: 5.663

Dey, Tanmoy, Amanda Saville, Kevin Myers, Susanta Tewari, David E. L. Cooke, Sucheta Tripathy, William E. Fry, Jean B. Ristaino, and Sanjoy Guha Roy. ‘Large Sub-Clonal Variation in Phytophthora Infestans from Recent Severe Late Blight Epidemics in India’. Scientific Reports 8, no. 1 (2018): 4429. IF: 4.379

Elliott, Marianne, Jennifer Yuzon, Sucheta Tripathy, Mai Bui, Gary A. Chastagner, Katie Coats, David M. Rizzo, Matteo Garbelotto, and Takao Kasuga. ‘Characterization of Phenotypic Variation and Genome Aberrations Observed among Phytophthora Ramorum Isolates from Diverse Hosts’. BMC Genomics 19 (2018): 1–19. IF: 3.969

Sinha, Roma, Raghwan, Subhadeep Das, Sonali Das, Mohammad Shadab, Rukhsana Chowdhury, Sucheta Tripathy*, and Nahid Ali*. ‘Genome Plasticity in Cultured Leishmania Donovani: Comparison of Early and Late Passages’. Frontiers in Microbiology 9 (2018): 1279. IF: 6.064

Sheikh, Lubna, Shivendra Sinha, Y. N. Singhababu, Vineeta Verma, Sucheta Tripathy, and Suprabha Nayar. ‘Traversing the Profile of Biomimetically Nanoengineered Iron Substituted Hydroxyapatite: Synthesis, Characterization, Property Evaluation, and Drug Release Modeling’. RSC Advances 8, no. 35 (2018): 19389–401. IF: 4.036

Vetukuri, Ramesh R#., Sucheta Tripathy*#, Mathu Malar C, Arijit Panda, Sandeep K. Kushwaha, Aakash Chawade, Erik Andreasson, Laura J. Grenville-Briggs, and Stephen C. Whisson. ‘Draft Genome Sequence for the Tree Pathogen Phytophthora Plurivora’. Genome Biology and Evolution 10, no. 9 (2018): 2432–42. IF: 4.065  (#*: Joint first and corresponding author)

Nasker, Purnendu, Mayuri Mukherjee, Shashi Kant, Sucheta Tripathy, Arijit Sinha, and Mitun Das. ‘Fluorine Substituted Nano Hydroxyapatite: Synthesis, Bio-Activity and Antibacterial Response Study’. Ceramics International 44, no. 17 (2018): 22008–13. IF: 5.16

2017:

 Das, Pijush, Susanta Roychoudhury, and Sucheta Tripathy*. ‘sigFeature: An R-Package for Significant Feature Selection Using SVM-RFE & t-Statistic’. Canadian Journal of Biotechnology 1, no. Special (2017): 35. IF: 1.8

Majumder, Rajib, Lubna Sheikh, Animesh Naskar, Vineeta, Manabendra Mukherjee, and Sucheta Tripathy*. ‘Depletion of Cr (VI) from Aqueous Solution by Heat Dried Biomass of a Newly Isolated Fungus Arthrinium Malaysianum: A Mechanistic Approach’. Scientific Reports 7, no. 1 (2017): 11254. IF: 4.379

2016:

Mukherjee, Soumya, Mathu Malar Chandrababunaidu, Arijit Panda, Suman Khowala, and Sucheta Tripathy*. ‘Tricking Arthrinium Malaysianum into Producing Industrially Important Enzymes under 2-Deoxy D-Glucose Treatment’. Frontiers in Microbiology 7 (2016): 596. IF: 6.06

Mohan, Aradhana, Ravi Shankar Singh, Manju Kumari, Devika Garg, Aditya Upadhyay, Carolyn M. Ecelbarger, Sucheta Tripathy, and Swasti Tiwari. ‘Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats’. PloS One 11, no. 4 (2016): e0154055. IF: 3.24 

Sheikh, Lubna, Sucheta Tripathy, and Suprabha Nayar. ‘Biomimetic Matrix Mediated Room Temperature Synthesis and Characterization of Nano-Hydroxyapatite towards Targeted Drug Delivery’. RSC Advances 6, no. 67 (2016): 62556–71. . IF: 4.036

2015:

Chandrababunaidu, Mathu Malar, Deeksha Singh, Diya Sen, Sushma Bhan, Subhadeep Das, Akash Gupta, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Draft Genome Sequence of Tolypothrix Boutellei Strain VB521301’. ASM Genome Announcements 3, no. 1 (2015): e00001-15. IF: 1.257

Chandrababunaidu, Mathu Malar, Diya Sen, and Sucheta Tripathy*. ‘Draft Genome Sequence of Filamentous Marine Cyanobacterium Lyngbya Confervoides Strain BDU141951’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

Bhattacharyya, Sourav, Mathu Malar Chandrababunaidu, Deeya Sen, Arijit Panda, Arpita Ghorai, Sushma Bhan, Neha Sanghi, and Sucheta Tripathy*. ‘Draft Genome Sequence of Exopolysaccharide-Producing Cyanobacterium Aphanocapsa Montana BDHKU 210001’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

Singh, Deeksha, Mathu Malar Chandrababunaidu, Arijit Panda, Diya Sen, Sourav Bhattacharyya, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Draft Genome Sequence of Cyanobacterium Hassallia Byssoidea Strain VB512170, Isolated from Monuments in India’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

Sen, Diya, Mathu Malar Chandrababunaidu, Deeksha Singh, Neha Sanghi, Arpita Ghorai, Gyan Prakash Mishra, Madhavi Madduluri, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema Millei VB511283, Isolated from Eastern India’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

Das, Abhishek, Arijit Panda, Deeksha Singh, Mathu Malar Chandrababunaidu, Gyan Prakash Mishra, Sushma Bhan, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Deciphering the Genome Sequences of the Hydrophobic Cyanobacterium Scytonema Tolypothrichoides VB-61278’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

Das, Subhadeep, Deeksha Singh, Madhavi Madduluri, Mathu Malar Chandrababunaidu, Akash Gupta, Siba Prasad Adhikary, and Sucheta Tripathy*. ‘Draft Genome Sequence of Bioactive-Compound-Producing Cyanobacterium Tolypothrix Campylonemoides Strain VB511288’. ASM Genome Announcements 3, no. 2 (2015): 10–1128. IF: 1.257

2014:

Bhowmick, S., and S. Tripathy*. ‘A Tale of Effectors; Their Secretory Mechanisms and Computational Discovery in Pathogenic, Non-Pathogenic and Commensal Microbes’. Mol Biol 3, no. 118 (2014): 1–14.

Bhowmick, Swati, Mathu Malar, Abhishek Das, Bhupesh Kumar Thakur, Piu Saha, Santasabuj Das, H. M. Rashmi, Virender K. Batish, Sunita Grover, and Sucheta Tripathy*. ‘Draft Genome Sequence of Lactobacillus Casei Lbs2’. ASM Genome Announcements 2, no. 6 (2014): 10–1128.

Publications from Virginia Tech, USA

2013:

Jiang, Rays H. Y., Irene de Bruijn, Brian J. Haas, Rodrigo Belmonte, Lars Löbach, James Christie, Guido van den Ackerveken, Arnaud Bottin, Vincent Bulone, Sara M. Díaz-Moreno…Sucheta Tripathy.. ‘Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia Parasitica’. PLoS Genetics 9, no. 6 (2013): e1003272. IF: 5.97

2012:

Tripathy, Sucheta*, Tejal Deo, and Brett M. Tyler. ‘Oomycete Transcriptomics Database: A Resource for Oomycete Transcriptomes’. BMC Genomics 13 (2012): 1–12. IF: 3.9

Tripathy, Sucheta*, and Rays H. Y. Jiang. ‘Massively Parallel Sequencing Technology in Pathogenic Microbes’. Plant Fungal Pathogens: Methods and Protocols, 2012, 271–94.

2011:

Wang, Qunqing, Changzhi Han, Adriana O. Ferreira, Xiaoli Yu, Wenwu Ye, Sucheta Tripathy, Shiv D. Kale, Biao Gu, Yuting Sheng, and Yangyang Sui. ‘Transcriptional Programming and Functional Interactions within the Phytophthora Sojae RXLR Effector Repertoire’. The Plant Cell 23, no. 6 (2011): 2064–86. IF: 11.4

2010:

Baxter, Laura#, Sucheta Tripathy#, Naveed Ishaque, Nico Boot, Adriana Cabral, Eric Kemen, Marco Thines, Audrey Ah-Fong, Ryan Anderson, and Wole Badejoko. ‘Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora Arabidopsidis Genome’. Science 330, no. 6010 (2010): 1549–51. (# equal contributor first author). IF: 44.1

Maroof, M. A. Saghai, Dominic M. Tucker, Jeffrey A. Skoneczka, Brian C. Bowman, Sucheta Tripathy, and Sue A. Tolin. ‘Fine Mapping and Candidate Gene Discovery of the Soybean Mosaic Virus Resistance Gene, Rsv4’. The Plant Genome 3, no. 1 (2010). IF: 3.9

Wang, Hehe, Lachelle Waller, Sucheta Tripathy, Steven K. St. Martin, Lecong Zhou, Konstantinos Krampis, Dominic M. Tucker, Yongcai Mao, Ina Hoeschele, and M. A. Saghai Maroof. ‘Analysis of Genes Underlying Soybean Quantitative Trait Loci Conferring Partial Resistance to Phytophthora Sojae’. The Plant Genome 3, no. 1 (2010). IF: 3.9

Lévesque, C. André, Henk Brouwer, Liliana Cano, John P. Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P. Robideau, Marco Thines, Joe Win…Sucheta Tripathy.. ‘Genome Sequence of the Necrotrophic Plant Pathogen Pythium Ultimum Reveals Original Pathogenicity Mechanisms and Effector Repertoire’. Genome Biology 11 (2010): 1–22. IF: 11.2

2009:

Zhou, Lecong, Santiago X. Mideros, Lei Bao, Regina Hanlon, Felipe D. Arredondo, Sucheta Tripathy, Konstantinos Krampis, Adam Jerauld, Clive Evans, and Steven K. St Martin. ‘Infection and Genotype Remodel the Entire Soybean Transcriptome’. BMC Genomics 10 (2009): 1–19. IF:3.9

 2008:

Jiang, Rays H. Y., Sucheta Tripathy, Francine Govers, and Brett M. Tyler. ‘RXLR Effector Reservoir in Two Phytophthora Species Is Dominated by a Single Rapidly Evolving Superfamily with More than 700 Members’. Proceedings of the National Academy of Sciences 105, no. 12 (2008): 4874–79. IF: 9.1

2007:

Torto-Alalibo, Trudy A., Sucheta Tripathy, Brian M. Smith, Felipe D. Arredondo, Lecong Zhou, Hua Li, Marcus C. Chibucos, Dinah Qutob, Mark Gijzen, and Chunhong Mao. ‘Expressed Sequence Tags from Phytophthora Sojae Reveal Genes Specific to Development and Infection’. Molecular Plant-Microbe Interactions 20, no. 7 (2007): 781–93. IF: 4.4

2006:

Tyler, Brett M., Sucheta Tripathy, Xuemin Zhang, Paramvir Dehal, Rays H. Y. Jiang, Andrea Aerts, Felipe D. Arredondo, Laura Baxter, Douda Bensasson, and Jim L. Beynon. ‘Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis’. Science 313, no. 5791 (2006): 1261–66. IF: 44

Zhang, Xuemin, Chantel Scheuring, Sucheta Tripathy, Zhanyou Xu, Chengcang Wu, Angela Ko, S. Ken Tian, Felipe Arredondo, Mi-Kyung Lee, and Felipe A. Santos. ‘An Integrated BAC and Genome Sequence Physical Map of Phytophthora Sojae’. Molecular Plant-Microbe Interactions 19, no. 12 (2006): 1302–10.

Tripathy, Sucheta*, and Brett M. Tyler. ‘The Repertoire of Transfer RNA Genes Is Tuned to Codon Usage Bias in the Genomes of Phytophthora Sojae and Phytophthora Ramorum’. Molecular Plant-Microbe Interactions 19, no. 12 (2006): 1322–28. IF: 4.4

Tripathy, Sucheta*, Varun N. Pandey, Bing Fang, Fidel Salas, and Brett M. Tyler. ‘VMD: A Community Annotation Database for Oomycetes and Microbial Genomes’. Nucleic Acids Research 34, no. (2006): D379–81. IF: 14

2002:

Tripathy, Sucheta*, and G. M. Reddy. ‘In Vitro Callus Induction and Plantlet Regeneration from Indian Cotton Cultivars’. Plant Cell Biotechnol. Mol. Biol 3, no. 3 & 4 (2002): 137–42. IF: 1.1

Tripathy, Sucheta*, and G. M. Reddy. ' A Study on the influence of Genotype, medium and additives on the induction of multiple shoots in Indian Cotton Cultivars'. Asian Journal of Microbiol Biotech. Env. Science. 4: 4. 515-519.

*Indicates author for correspondence

Book Chapters and Books:

1.            Book: Cyanobacterial Molecular Techniques. Aribam Geeta, Asha Rani Prusty, Subhajeet Dutta, Bornita Das and Sucheta Tripathy*. Cambridge Scholar Publishing. ISBN: 978-1-0364-4335-1. (2025)

2.            Chapter: Insights into Metalloproteinases Regulation in Gastrointestinal Cancers: Epigenetic Influences in the Book: Gastrointestinal Cancers: Prevention, Detection and Treatment. Verma S, Tripathy S., Raychaudhuri S, Swarnakar S. Editor, A Tyagi. Nova Publication (2016).

3.            Chapter: Dissecting Transcriptomes of Cyanobacteria for novel metabolite production . Sucheta Tripathy*, Deeksha Singh, Mathumalar C, Abhishek Das.Genomics, Proteomics and Metabolomics in nutraceuticals and functional foods, edited by Bagchi for John Wiley & Sons. (2015)

4.            Chapter: Cancer and Diet In: Herbal Perspective: Present and Future Sucheta Tripathy (2011) 468. Vedam Books isbn:8189304917.

5.            Chapter: Tyler, Brett M., Rays H. Y. Jiang, Lecong Zhou, Sucheta Tripathy, Daolong Dou, Trudy Torto-Alalibo, Hua Li, Yongcai Mao, Bing Liu, and Miguel Vega-Sanchez. ‘Functional Genomics and Bioinformatics of the Phytophthora Sojae Soybean Interaction’. In Genomics of Disease, 67–78. Springer New York New York, NY, 2008.

Products

•  Genome Annotator Lite -> https://hub.docker.com/r/cglabiicb/gal/: A software package to analyze and visualize the genome in a database
  
  
•  www.eumicrobedb.org -> A complete resource for oomycetes genomes
  
  
•  http://bgagenomics.iicb.res.in -> A comprehensive resource for all completely sequenced Cyanobacterial genomes.
  
  
•  OmicsPCA -> Quantitative integration and analysis of multiple omics assays from heterogeneous samples 
  (https://bioconductor.org/packages/release/bioc/html/OMICsPCA.html)
  
  
• SigFeature -> Significant feature selection using SVM-RFE & t-statistic 
  (https://www.bioconductor.org/packages/devel/bioc/html/sigFeature.html)